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  5. Smo271907

Smo271907


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS3a component


Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo271907
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT3G04840 No alias Ribosomal protein S3Ae 0.05 OrthoFinder output from all 47 species
AT4G34670 No alias Ribosomal protein S3Ae 0.06 OrthoFinder output from all 47 species
Aop_g05100 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene10422.t1 Aspi01Gene10422 component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0087.g042272 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Azfi_s0171.g055692 No alias not classified & original description: CDS=106-348 0.03 OrthoFinder output from all 47 species
Azfi_s0825.g088224 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cba_g69205 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.10G049700.1 Ceric.10G049700 component *(eS1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre13.g568650 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dac_g13329 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01021836001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Gb_02289 No alias component RPS3a of SSU proteome 0.06 OrthoFinder output from all 47 species
LOC_Os02g18550.1 LOC_Os02g18550 component RPS3a of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os03g10340.1 LOC_Os03g10340 component RPS3a of SSU proteome 0.08 OrthoFinder output from all 47 species
LOC_Os12g21798.1 LOC_Os12g21798 component RPS3a of SSU proteome 0.07 OrthoFinder output from all 47 species
MA_31004g0010 No alias component RPS3a of SSU proteome 0.06 OrthoFinder output from all 47 species
Mp6g02810.1 No alias component RPS3a of SSU proteome 0.07 OrthoFinder output from all 47 species
Msp_g05152 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g15097 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_17260V3.1 Pp3c11_17260 Ribosomal protein S3Ae 0.02 OrthoFinder output from all 47 species
Pp3c22_18300V3.1 Pp3c22_18300 Ribosomal protein S3Ae 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025749 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g06811 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g07668 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g07669 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc03g097900.3.1 Solyc03g097900 component RPS3a of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc06g072490.3.1 Solyc06g072490 component RPS3a of SSU proteome 0.09 OrthoFinder output from all 47 species
Spa_g05776 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g01747 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e038777_P001 Zm00001e038777 component RPS3a of SSU proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 15 221
No external refs found!