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  5. Smo270704

Smo270704


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL22 component


Gene families : OG0000996 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo270704
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00189250 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
AT3G05560 No alias Ribosomal L22e protein family 0.06 OrthoFinder output from all 47 species
AT5G27770 No alias Ribosomal L22e protein family 0.06 OrthoFinder output from all 47 species
Ala_g18322 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g10541 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g22540 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38161.t1 Aspi01Gene38161 component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007793 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0005.g009357 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.26G014800.1 Ceric.26G014800 component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.7 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre07.g357850 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Dac_g04863 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g18517 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01028021001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01031130001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01031158001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01035141001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Gb_08874 No alias component RPL22 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Gb_36164 No alias component RPL22 of LSU proteome component 0.1 OrthoFinder output from all 47 species
LOC_Os03g22340.1 LOC_Os03g22340 component RPL22 of LSU proteome component 0.08 OrthoFinder output from all 47 species
LOC_Os07g47710.1 LOC_Os07g47710 component RPL22 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Len_g02014 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Len_g02481 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_130453g0010 No alias component RPL22 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp4g02920.1 No alias component RPL22 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Msp_g03306 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g36770 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g40025 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_630V3.1 Pp3c11_630 Ribosomal L22e protein family 0.04 OrthoFinder output from all 47 species
Pp3c1_120V3.1 Pp3c1_120 Ribosomal L22e protein family 0.07 OrthoFinder output from all 47 species
Pp3c2_28500V3.1 Pp3c2_28500 Ribosomal L22e protein family 0.08 OrthoFinder output from all 47 species
Pp3c2_28510V3.1 Pp3c2_28510 Ribosomal L22e protein family 0.08 OrthoFinder output from all 47 species
Pp3c7_27030V3.1 Pp3c7_27030 Ribosomal L22e protein family 0.06 OrthoFinder output from all 47 species
Solyc01g099830.3.1 Solyc01g099830 component RPL22 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Solyc09g075150.3.1 Solyc09g075150 component RPL22 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Solyc09g075155.1.1 Solyc09g075155 component RPL22 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Spa_g22846 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g25050 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g36488 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e035835_P001 Zm00001e035835 component RPL22 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e038221_P001 Zm00001e038221 component RPL22 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002671 Ribosomal_L22e 17 126
No external refs found!