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  5. Smo270247

Smo270247


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL38 component


Gene families : OG0004541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004541_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo270247
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT2G43460 No alias Ribosomal L38e protein family 0.09 OrthoFinder output from all 47 species
AT3G59540 No alias Ribosomal L38e protein family 0.07 OrthoFinder output from all 47 species
Aop_g32189 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0319.g064444 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Azfi_s0662.g081457 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.07G049300.1 Ceric.07G049300 component *(eL38) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.28G050900.1 Ceric.28G050900 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.35G022100.1 Ceric.35G022100 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.35G022200.1 Ceric.35G022200 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.35G022300.1 Ceric.35G022300 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021719.6 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Cre07.g325746 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Dac_g44338 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
GSVIVT01010854001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
GSVIVT01019051001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
Gb_16529 No alias component RPL38 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Gb_29252 No alias component RPL38 of LSU proteome component 0.08 OrthoFinder output from all 47 species
LOC_Os11g24610.1 LOC_Os11g24610 component RPL38 of LSU proteome component 0.06 OrthoFinder output from all 47 species
MA_20588g0010 No alias component RPL38 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Mp7g14520.1 No alias component RPL38 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Pp3c10_20240V3.1 Pp3c10_20240 Ribosomal L38e protein family 0.11 OrthoFinder output from all 47 species
Pp3c12_17990V3.1 Pp3c12_17990 Ribosomal L38e protein family 0.05 OrthoFinder output from all 47 species
Pp3c4_11700V3.1 Pp3c4_11700 Ribosomal L38e protein family 0.1 OrthoFinder output from all 47 species
Ppi_g26712 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g20427 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Solyc05g055640.4.1 Solyc05g055640 component RPL38 of LSU proteome component 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006457 protein folding IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0034998 oligosaccharyltransferase I complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002675 Ribosomal_L38e 2 68
No external refs found!