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  5. Smo268639

Smo268639 (EMB1080)


Aliases : EMB1080

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS11 component


Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo268639
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00158320 EMB1080,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.15 OrthoFinder output from all 47 species
AMTR_s00046p00028310 EMB1080,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 OrthoFinder output from all 47 species
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.27 OrthoFinder output from all 47 species
AT4G30800 No alias Nucleic acid-binding, OB-fold-like protein 0.08 OrthoFinder output from all 47 species
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.21 OrthoFinder output from all 47 species
Adi_g014139 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Adi_g021180 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Adi_g021181 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Adi_g095793 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g115558 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g127076 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00374 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Ala_g17880 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Ala_g34347 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Als_g45583 RPS11-BETA component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g63595 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Aob_g06312 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Aop_g00917 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g40420 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Aspi01Gene71270.t1 Aspi01Gene71270 component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0268.g061080 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Cba_g17409 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g28522 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.02G042300.1 Ceric.02G042300 component *(uS17) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Ceric.06G039400.1 Ceric.06G039400 component *(uS17) of small ribosomal-subunit (SSU)... 0.23 OrthoFinder output from all 47 species
Ceric.27G062600.1 Ceric.27G062600 component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000551.22 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
Cre12.g514500 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 OrthoFinder output from all 47 species
Dac_g01215 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Dac_g01981 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Dac_g26585 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g05219 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Dcu_g09040 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g21739 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g51508 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dde_g22249 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01012877001 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder output from all 47 species
GSVIVT01035927001 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 OrthoFinder output from all 47 species
Gb_14912 EMB1080 component RPS11 of SSU proteome 0.16 OrthoFinder output from all 47 species
LOC_Os04g42380.1 EMB1080, LOC_Os04g42380 component RPS11 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os04g52361.1 EMB1080, LOC_Os04g52361 component RPS11 of SSU proteome 0.22 OrthoFinder output from all 47 species
LOC_Os08g10608.1 RPS11-BETA,... component RPS11 of SSU proteome 0.18 OrthoFinder output from all 47 species
Len_g03065 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Len_g04081 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Len_g54645 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g31892 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
MA_19350g0010 EMB1080 component RPS11 of SSU proteome 0.22 OrthoFinder output from all 47 species
Mp4g23360.1 EMB1080 component RPS11 of SSU proteome 0.12 OrthoFinder output from all 47 species
Mp6g10500.1 EMB1080 component RPS11 of SSU proteome 0.25 OrthoFinder output from all 47 species
Msp_g22593 RPS11-BETA component *(uS17) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Msp_g27112 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Nbi_g01705 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Nbi_g01738 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ore_g11217 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ore_g11218 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Pp3c1_27980V3.1 EMB1080, Pp3c1_27980 Nucleic acid-binding, OB-fold-like protein 0.15 OrthoFinder output from all 47 species
Pp3c2_13690V3.1 EMB1080, Pp3c2_13690 Nucleic acid-binding, OB-fold-like protein 0.09 OrthoFinder output from all 47 species
Pp3s116_30V3.1 EMB1080, Pp3s116_30 Nucleic acid-binding, OB-fold-like protein 0.15 OrthoFinder output from all 47 species
Ppi_g53479 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017004 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g04222 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g12787 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc06g073790.3.1 Solyc06g073790 component RPS11 of SSU proteome 0.19 OrthoFinder output from all 47 species
Solyc06g073800.3.1 Solyc06g073800 component RPS11 of SSU proteome 0.18 OrthoFinder output from all 47 species
Solyc12g042080.2.1 Solyc12g042080 component RPS11 of SSU proteome 0.21 OrthoFinder output from all 47 species
Spa_g08091 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Spa_g22575 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Spa_g31268 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.14 OrthoFinder output from all 47 species
Tin_g44672 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.13 OrthoFinder output from all 47 species
Zm00001e006955_P001 RPS11-BETA,... component RPS11 of SSU proteome 0.19 OrthoFinder output from all 47 species
Zm00001e041635_P001 RPS11-BETA,... component RPS11 of SSU proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 74 142
No external refs found!