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  5. Smo268399

Smo268399


Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm6 component


Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo268399
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00226370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
AT2G43810 No alias Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
AT4G30220 RUXF small nuclear ribonucleoprotein F 0.15 OrthoFinder output from all 47 species
Als_g63045 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Aop_g25403 No alias component *(LSm6) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Aop_g28357 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Ceric.1Z177500.1 Ceric.1Z177500 component *(LSm6) of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Ceric.27G002400.1 RUXF, Ceric.27G002400 component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Ceric.36G038500.1 RUXF, Ceric.36G038500 component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000944.19 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001355.5 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Cre03.g151750 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
Cre05.g241300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
GSVIVT01003994001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
LOC_Os02g08090.1 LOC_Os02g08090 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
LOC_Os02g30624.2 LOC_Os02g30624 component LSm6 of U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
LOC_Os04g31950.1 LOC_Os04g31950 component LSm6 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
LOC_Os11g43620.1 LOC_Os11g43620 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Mp5g02830.1 No alias component LSm6 of U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Mp6g01610.1 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Msp_g27535 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Nbi_g30602 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Pir_g63193 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Pp3c12_17630V3.1 RUXF, Pp3c12_17630 small nuclear ribonucleoprotein F 0.02 OrthoFinder output from all 47 species
Pp3c18_1280V3.1 Pp3c18_1280 Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Pp3c22_1090V3.1 Pp3c22_1090 Small nuclear ribonucleoprotein family protein 0.01 OrthoFinder output from all 47 species
Pp3c4_14270V3.1 RUXF, Pp3c4_14270 small nuclear ribonucleoprotein F 0.01 OrthoFinder output from all 47 species
Zm00001e025108_P001 RUXF, Zm00001e025108 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
CC GO:0034998 oligosaccharyltransferase I complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 16 80
No external refs found!