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  5. Smo267958

Smo267958


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL36 component


Gene families : OG0000800 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo267958
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00179170 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
AT2G37600 No alias Ribosomal protein L36e family protein 0.13 OrthoFinder output from all 47 species
AT3G53740 No alias Ribosomal protein L36e family protein 0.15 OrthoFinder output from all 47 species
AT5G02450 No alias Ribosomal protein L36e family protein 0.15 OrthoFinder output from all 47 species
Adi_g022992 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g029274 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Adi_g067485 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g44350 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g16043 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aop_g32159 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g44035 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene34579.t1 Aspi01Gene34579 component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030800 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Azfi_s0383.g067431 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cba_g03577 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.04G069000.1 Ceric.04G069000 component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.08G064600.1 Ceric.08G064600 component *(eL36) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.69 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Cre12.g484050 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Dac_g01113 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dac_g25734 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g17175 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
GSVIVT01026914001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01028917001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Gb_10248 No alias component RPL36 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Gb_27261 No alias component RPL36 of LSU proteome component 0.08 OrthoFinder output from all 47 species
LOC_Os01g62350.1 LOC_Os01g62350 component RPL36 of LSU proteome component 0.09 OrthoFinder output from all 47 species
LOC_Os05g38520.1 LOC_Os05g38520 component RPL36 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Len_g17841 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g31817 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g38888 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10430792g0010 No alias component RPL36 of LSU proteome component 0.11 OrthoFinder output from all 47 species
MA_24782g0010 No alias component RPL36 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_69756g0010 No alias component RPL36 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp1g05460.1 No alias component RPL36 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Msp_g00137 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g44089 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Pir_g07917 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g56562 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c14_19960V3.1 Pp3c14_19960 Ribosomal protein L36e family protein 0.08 OrthoFinder output from all 47 species
Pp3c1_32310V3.1 Pp3c1_32310 Ribosomal protein L36e family protein 0.04 OrthoFinder output from all 47 species
Ppi_g25844 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Ppi_g33926 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g38235 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004334 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g07231 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Sam_g23187 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g23349 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g23436 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g23546 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g31192 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g39854 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g41738 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g46575 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g48487 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Solyc03g025520.4.1 Solyc03g025520 component RPL36 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Solyc06g036050.4.1 Solyc06g036050 component RPL36 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Spa_g03176 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g03177 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g42185 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g44897 No alias component *(eL36) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e027238_P001 Zm00001e027238 component RPL36 of LSU proteome component 0.1 OrthoFinder output from all 47 species
Zm00001e031832_P002 Zm00001e031832 component RPL36 of LSU proteome component 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000509 Ribosomal_L36e 9 101
No external refs found!