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  5. Smo266613

Smo266613 (LYC)


Aliases : LYC

Description : Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.LCY-b lycopene beta cyclase


Gene families : OG0004073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo266613
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AT3G10230 LYC lycopene cyclase 0.03 OrthoFinder output from all 47 species
Cre08.g358538 LYC Secondary metabolism.terpenoids.terpenoid... 0.04 OrthoFinder output from all 47 species
Ehy_g06810 LYC EC_5.5 intramolecular lyase & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os02g09750.1 LYC, LOC_Os02g09750 lycopene beta cyclase (LCY-b) 0.02 OrthoFinder output from all 47 species
Sam_g14458 No alias EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g079480.1.1 LYC, Solyc10g079480 lycopene beta cyclase (LCY-b) 0.03 OrthoFinder output from all 47 species
Zm00001e013933_P001 LYC, Zm00001e013933 lycopene beta cyclase (LCY-b) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!