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  5. Smo232430

Smo232430 (PDS3, PDS, PDE226)


Aliases : PDS3, PDS, PDE226

Description : Secondary metabolism.terpenoids.terpenoid synthesis.carotenoid metabolism.PDS phytoene desaturase


Gene families : OG0006245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo232430

Target Alias Description ECC score Gene Family Method Actions
AT4G14210 PDS3, PDS, PDE226 phytoene desaturase 3 0.03 OrthoFinder output from all 47 species
Aev_g13760 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09707 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene08410.t1 PDS3, PDS,... phytoene desaturase *(PDS) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0047.g030344 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: CDS=138-1889 0.04 OrthoFinder output from all 47 species
Cba_g36080 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.09 OrthoFinder output from all 47 species
Ceric.08G066500.1 PDS3, PDS,... phytoene desaturase *(PDS) & original description:... 0.02 OrthoFinder output from all 47 species
Cre12.g509650 PDS3, PDS, PDE226 Secondary metabolism.terpenoids.terpenoid... 0.05 OrthoFinder output from all 47 species
GSVIVT01016650001 PDS3, PDS, PDE226 Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
Lfl_g01859 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g04901 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17790 PDS3, PDS, PDE226 phytoene desaturase *(PDS) & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e000618_P002 PDS3, PDS,... phytoene desaturase (PDS) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0003333 amino acid transmembrane transport IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903825 organic acid transmembrane transport IEP HCCA
BP GO:1905039 carboxylic acid transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 107 549
No external refs found!