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  5. Smo230895

Smo230895


Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-E component


Gene families : OG0007427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo230895
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00189060 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
AT2G18740 No alias Small nuclear ribonucleoprotein family protein 0.08 OrthoFinder output from all 47 species
AT4G30330 No alias Small nuclear ribonucleoprotein family protein 0.08 OrthoFinder output from all 47 species
Adi_g022466 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Ala_g15675 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Aspi01Gene28255.t1 Aspi01Gene28255 component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species
Azfi_s0067.g036221 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Ceric.12G097200.1 Ceric.12G097200 component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Cre08.g385200 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
GSVIVT01008301001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder output from all 47 species
LOC_Os08g05530.1 LOC_Os08g05530 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Lfl_g32234 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
MA_118124g0010 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.07 OrthoFinder output from all 47 species
Mp5g07450.1 No alias component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Pir_g13139 No alias component *(Sm-E) of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Pp3c14_15210V3.1 Pp3c14_15210 Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Zm00001e039734_P001 Zm00001e039734 component Sm-E of U1/U2/U4/U5-associated Sm accessory... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 20 83
No external refs found!