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  5. Smo228435

Smo228435 (RPE, EMB2728)


Aliases : RPE, EMB2728

Description : Photosynthesis.calvin cycle.phosphopentose epimerase


Gene families : OG0004751 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004751_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo228435

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00063510 RPE, EMB2728,... Photosynthesis.calvin cycle.phosphopentose epimerase 0.07 OrthoFinder output from all 47 species
AT5G61410 RPE, EMB2728 D-ribulose-5-phosphate-3-epimerase 0.05 OrthoFinder output from all 47 species
Aev_g14485 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g14486 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g01466 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08095 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g32397 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07259 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene18480.t1 RPE, EMB2728,... EC_5.1 racemase or epimerase & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g08756 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.11 OrthoFinder output from all 47 species
Ceric.09G052500.1 RPE, EMB2728,... EC_5.1 racemase or epimerase & original description:... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020564.39 RPE, EMB2728 Ribulose-phosphate 3-epimerase, chloroplastic... 0.09 OrthoFinder output from all 47 species
Cre12.g511900 RPE, EMB2728 Photosynthesis.calvin cycle.phosphopentose epimerase 0.02 OrthoFinder output from all 47 species
Dac_g15437 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g42634 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g14724 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06530 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01007976001 RPE, EMB2728 Photosynthesis.calvin cycle.phosphopentose epimerase 0.12 OrthoFinder output from all 47 species
Gb_19425 RPE, EMB2728 phosphopentose epimerase 0.1 OrthoFinder output from all 47 species
LOC_Os03g07300.1 RPE, EMB2728,... phosphopentose epimerase 0.13 OrthoFinder output from all 47 species
Len_g19382 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.11 OrthoFinder output from all 47 species
Len_g59136 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06506 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g11661 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.03 OrthoFinder output from all 47 species
MA_92814g0010 RPE, EMB2728 phosphopentose epimerase 0.07 OrthoFinder output from all 47 species
Mp6g10960.1 RPE, EMB2728 phosphopentose epimerase 0.09 OrthoFinder output from all 47 species
Msp_g05510 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g19497 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g06182 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.09 OrthoFinder output from all 47 species
Pnu_g08509 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.09 OrthoFinder output from all 47 species
Ppi_g61783 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.12 OrthoFinder output from all 47 species
Solyc03g115820.3.1 RPE, EMB2728,... phosphopentose epimerase 0.08 OrthoFinder output from all 47 species
Spa_g28901 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g40504 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g16249 RPE, EMB2728 EC_5.1 racemase or epimerase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e000521_P003 RPE, EMB2728,... phosphopentose epimerase 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
InterPro domains Description Start Stop
IPR000056 Ribul_P_3_epim-like 62 260
No external refs found!