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  5. Smo228181

Smo228181 (RUXF)


Aliases : RUXF

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-F component


Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo228181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00226370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
AT2G43810 No alias Small nuclear ribonucleoprotein family protein 0.05 OrthoFinder output from all 47 species
AT3G59810 No alias Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
AT4G30220 RUXF small nuclear ribonucleoprotein F 0.09 OrthoFinder output from all 47 species
Adi_g129920 No alias component *(LSm6) of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Ceric.27G002400.1 RUXF, Ceric.27G002400 component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Ceric.36G038500.1 RUXF, Ceric.36G038500 component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001355.5 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Cre03.g151750 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder output from all 47 species
Cre05.g241300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
GSVIVT01003994001 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
LOC_Os02g08090.1 LOC_Os02g08090 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
LOC_Os02g30624.2 LOC_Os02g30624 component LSm6 of U6-associated LSm accessory... 0.05 OrthoFinder output from all 47 species
LOC_Os04g31950.1 LOC_Os04g31950 component LSm6 of U6-associated LSm accessory... 0.04 OrthoFinder output from all 47 species
LOC_Os11g43620.1 LOC_Os11g43620 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Mp6g01610.1 No alias component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Msp_g27535 RUXF component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 OrthoFinder output from all 47 species
Pp3c12_17630V3.1 RUXF, Pp3c12_17630 small nuclear ribonucleoprotein F 0.01 OrthoFinder output from all 47 species
Solyc10g078450.2.1 Solyc10g078450 component LSm6 of U6-associated LSm accessory... 0.02 OrthoFinder output from all 47 species
Zm00001e025108_P001 RUXF, Zm00001e025108 component Sm-F of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 11 73
No external refs found!