Smo178562

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp5 RNA helicase

Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo178562

Target	Alias	Description	ECC score	Gene Family Method
Adi_g085078	No alias	RNA helicase *(RCF1) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.37G065700.1	Ceric.37G065700	RNA helicase *(RCF1) & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000204.43	No alias	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
Cre16.g676400	No alias	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
LOC_Os08g06344.2	LOC_Os08g06344	RNA helicase (Prp5)	0.01	OrthoFinder output from all 47 species
Len_g49748	No alias	RNA helicase *(RCF1) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g02860	No alias	RNA helicase *(RCF1) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e040204_P001	Zm00001e040204	RNA helicase (Prp5)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	1	118

External Links

No external refs found!