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  5. Smo177305

Smo177305


Description : Protein RETICULATA-RELATED 5, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001331 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001331_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo177305
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AT2G40400 No alias Protein of unknown function (DUF399 and DUF3411) 0.03 OrthoFinder output from all 47 species
Adi_g048192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07856 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06534.t1 Aspi01Gene06534 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g033944 No alias not classified & original description: CDS=18-2474 0.11 OrthoFinder output from all 47 species
Ceric.22G078500.1 Ceric.22G078500 not classified & original description: pacid=50614469... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021617.18 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g18040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_17057 No alias Protein RETICULATA-RELATED 5, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_17059 No alias Protein RETICULATA-RELATED 6, chloroplastic... 0.04 OrthoFinder output from all 47 species
LOC_Os01g61120.1 LOC_Os01g61120 Protein RETICULATA-RELATED 6, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os05g39680.1 LOC_Os05g39680 component SNX2 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species
MA_10429062g0010 No alias Protein RETICULATA-RELATED 5, chloroplastic... 0.03 OrthoFinder output from all 47 species
Msp_g15648 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11767 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g20912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g08153 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02157 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57518 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g08338 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g22685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e019415_P003 Zm00001e019415 Protein RETICULATA-RELATED 6, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR021825 RETICULATA-related 458 638
No external refs found!