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  5. Smo172620

Smo172620 (ATCUL4, CUL4)


Aliases : ATCUL4, CUL4

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.CUL4 scaffold component


Gene families : OG0000920 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000920_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo172620

Target Alias Description ECC score Gene Family Method Actions
AT1G26830 ATCUL3A, ATCUL3,... cullin 3 0.03 OrthoFinder output from all 47 species
Adi_g058112 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Aev_g15218 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.05 OrthoFinder output from all 47 species
Ala_g02559 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Ala_g06366 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Als_g18973 ATCUL4, CUL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07404 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene12486.t1 ATCUL4, CUL4,... scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000157.110 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.190 ATCUL4, CUL4 Cullin-4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre07.g324050 ATCUL3A, ATCUL3,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dcu_g13417 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Ehy_g02848 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
LOC_Os03g57290.1 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Len_g07971 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Len_g08803 ATCUL3A, ATCUL3,... scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.03 OrthoFinder output from all 47 species
Mp1g07340.1 ATCUL4, CUL4 scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Mp4g12190.1 ATCUL3A, ATCUL3,... scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 OrthoFinder output from all 47 species
Ore_g17472 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Sam_g09683 No alias scaffold component *(CUL3) of CUL3-BTB E3 ligase... 0.02 OrthoFinder output from all 47 species
Sam_g13649 No alias scaffold component *(CUL4) of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Tin_g01191 ATCUL4, CUL4 scaffold component *(CUL4) of CUL4-DDB1 ubiquiTination... 0.03 OrthoFinder output from all 47 species
Zm00001e005919_P001 ATCUL4, CUL4,... scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 698 758
No external refs found!