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  5. Smo171028

Smo171028 (ATCIMS, ATMS1, ATMETS)


Aliases : ATCIMS, ATMS1, ATMETS

Description : Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.L-homocysteine S-methyltransferase activities.cobalamine-independent methionine synthase


Gene families : OG0000901 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000901_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo171028
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00117110 ATCIMS, ATMS1,... Amino acid metabolism.biosynthesis.aspartate... 0.04 OrthoFinder output from all 47 species
AT3G03780 MS2, ATMS2 methionine synthase 2 0.07 OrthoFinder output from all 47 species
AT5G17920 ATCIMS, ATMS1, ATMETS Cobalamin-independent synthase family protein 0.07 OrthoFinder output from all 47 species
Aev_g02500 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Ala_g08137 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Ala_g14579 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Als_g38718 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Aop_g07584 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Aop_g31283 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene18255.t1 ATCIMS, ATMS1,... EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Cba_g14828 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ceric.14G083200.1 ATCIMS, ATMS1,... EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Cre03.g180750 ATCIMS, ATMS1, ATMETS Amino acid metabolism.biosynthesis.aspartate... 0.04 OrthoFinder output from all 47 species
Dac_g06622 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Dac_g11774 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Dac_g21137 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Dac_g21138 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Dac_g28897 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Dac_g39791 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.08 OrthoFinder output from all 47 species
Dcu_g14356 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Dcu_g20010 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g08038 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09199 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
GSVIVT01029971001 ATCIMS, ATMS1, ATMETS Amino acid metabolism.biosynthesis.aspartate... 0.11 OrthoFinder output from all 47 species
GSVIVT01037511001 ATCIMS, ATMS1, ATMETS Amino acid metabolism.biosynthesis.aspartate... 0.04 OrthoFinder output from all 47 species
Gb_23743 MS2, ATMS2 methyl-tetrahydrofolate-dependent methionine synthase 0.05 OrthoFinder output from all 47 species
LOC_Os12g42876.1 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.09 OrthoFinder output from all 47 species
LOC_Os12g42884.1 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.13 OrthoFinder output from all 47 species
Len_g19043 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.09 OrthoFinder output from all 47 species
Len_g37384 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Lfl_g04166 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Lfl_g06635 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
MA_10090g0010 ATCIMS, ATMS1, ATMETS methyl-tetrahydrofolate-dependent methionine synthase 0.04 OrthoFinder output from all 47 species
MA_10427606g0010 MS2, ATMS2 methyl-tetrahydrofolate-dependent methionine synthase 0.03 OrthoFinder output from all 47 species
MA_10436788g0010 ATCIMS, ATMS1, ATMETS 5-methyltetrahydropteroyltriglutamate--homocysteine... 0.03 OrthoFinder output from all 47 species
MA_445633g0010 MS2, ATMS2 5-methyltetrahydropteroyltriglutamate--homocysteine... 0.06 OrthoFinder output from all 47 species
MA_7864930g0010 MS2, ATMS2 5-methyltetrahydropteroyltriglutamate--homocysteine... 0.06 OrthoFinder output from all 47 species
MA_8553148g0010 ATCIMS, ATMS1, ATMETS 5-methyltetrahydropteroyltriglutamate--homocysteine... 0.04 OrthoFinder output from all 47 species
MA_903046g0010 ATCIMS, ATMS1, ATMETS 5-methyltetrahydropteroyltriglutamate--homocysteine... 0.04 OrthoFinder output from all 47 species
Mp1g04570.1 ATCIMS, ATMS1, ATMETS methyl-tetrahydrofolate-dependent methionine synthase 0.04 OrthoFinder output from all 47 species
Msp_g34030 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Nbi_g11206 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Nbi_g24444 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Ore_g07025 MS2, ATMS2 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Ore_g09430 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.05 OrthoFinder output from all 47 species
Pir_g03288 ATCIMS, ATMS1, ATMETS methyl-tetrahydrofolate-dependent methionine synthase &... 0.07 OrthoFinder output from all 47 species
Pir_g13317 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Pir_g66391 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Pnu_g25605 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Ppi_g04628 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Ppi_g63576 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Sam_g14425 No alias EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Solyc10g081510.2.1 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.09 OrthoFinder output from all 47 species
Spa_g03147 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g06170 MS2, ATMS2 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g14432 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g14699 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Spa_g15406 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.07 OrthoFinder output from all 47 species
Spa_g41877 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.1 OrthoFinder output from all 47 species
Spa_g41923 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45631 MS2, ATMS2 EC_2.1 transferase transferring one-carbon group &... 0.08 OrthoFinder output from all 47 species
Spa_g55645 ATCIMS, ATMS1, ATMETS not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g18926 ATCIMS, ATMS1, ATMETS EC_2.1 transferase transferring one-carbon group &... 0.03 OrthoFinder output from all 47 species
Zm00001e003281_P001 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.06 OrthoFinder output from all 47 species
Zm00001e005228_P001 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.13 OrthoFinder output from all 47 species
Zm00001e012368_P001 ATCIMS, ATMS1,... methyl-tetrahydrofolate-dependent methionine synthase 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
InterPro domains Description Start Stop
IPR013215 Cbl-indep_Met_Synth_N 3 317
No external refs found!