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  5. LOC_Os02g51480.1

LOC_Os02g51480.1


Description : Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza sativa subsp. japonica (sp|a3abe1|ppr5_orysj : 919.0)


Gene families : OG_01_0000306 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000306_tree ,
OG_02_0007143 (LandPlants) Phylogenetic Tree(s): OG_02_0007143_tree ,
OG_03_0009674 (SeedPlants) Phylogenetic Tree(s): OG_03_0009674_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g51480.1
Cluster HCCA: Cluster_349

Target Alias Description ECC score Gene Family Method Actions
AT1G62350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
Cpa|evm.model.tig00001623.10 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.01 Archaeplastida
GSVIVT01028689001 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.03 Archaeplastida
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.05 Archaeplastida
GSVIVT01038096001 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.04 Archaeplastida
Gb_18854 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.02 Archaeplastida
Gb_40303 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_946756g0010 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Pp3c8_13830V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Smo119487 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.07 Archaeplastida
Smo135826 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 Archaeplastida
Smo407937 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.03 Archaeplastida
Smo416782 No alias Protein THYLAKOID ASSEMBLY 8-like, chloroplastic... 0.02 Archaeplastida
Solyc01g006500.4.1 No alias Pentatricopeptide repeat-containing protein At5g48730,... 0.04 Archaeplastida
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.02 Archaeplastida
Zm00001e025825_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
AMTR_s00007p00203740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39620,... 0.02 LandPlants
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.03 LandPlants
MA_12518g0010 No alias Pentatricopeptide repeat-containing protein PPR5... 0.05 LandPlants
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 LandPlants
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
Gb_36199 No alias Pentatricopeptide repeat-containing protein At4g39620,... 0.02 SeedPlants
Solyc04g054270.4.1 No alias Pentatricopeptide repeat-containing protein PPR5... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 154 207
IPR002885 Pentatricopeptide_repeat 229 276
IPR002885 Pentatricopeptide_repeat 373 401
IPR002885 Pentatricopeptide_repeat 123 152
IPR002885 Pentatricopeptide_repeat 303 332
No external refs found!