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Description : Multi-process regulation.circadian clock.core oscillator protein (LHY, CCA1)
Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo166821 | |
| Cluster | HCCA: Cluster_15 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00272270 | LHY1, LHY,... | Multi-process regulation.circadian clock.core oscillator... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00044p00072910 | RVE2, CIR1,... | RNA biosynthesis.transcriptional activation.MYB... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G01060 | LHY1, LHY | Homeodomain-like superfamily protein | 0.08 | OrthoFinder output from all 47 species | |
| AT1G01520 | No alias | Homeodomain-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G46830 | CCA1 | circadian clock associated 1 | 0.07 | OrthoFinder output from all 47 species | |
| AT3G09600 | No alias | Homeodomain-like superfamily protein | 0.11 | OrthoFinder output from all 47 species | |
| AT5G17300 | RVE1 | Homeodomain-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g088112 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g05996 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g12530 | RVE2, CIR1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g15171 | RVE1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g23846 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g46995 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g32805 | LHY1, LHY | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g20881 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g33458 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene31403.t1 | RVE1, Aspi01Gene31403 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000277 | No alias | circadian clock factor *(REVEILLE) & original... | 0.08 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g008971 | RVE1 | transcription factor *(REVEILLE) & original description:... | 0.07 | OrthoFinder output from all 47 species | |
| Azfi_s0042.g026930 | CCA1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.08 | OrthoFinder output from all 47 species | |
| Azfi_s0065.g035858 | RVE1 | transcription factor *(REVEILLE) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g24529 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G087900.1 | RVE2, CIR1,... | transcription factor *(REVEILLE) & original description:... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.06G032400.1 | RVE2, CIR1,... | transcription factor *(REVEILLE) & original description:... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.07G057200.1 | RVE1, Ceric.07G057200 | transcription factor *(REVEILLE) & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Cre12.g514400 | RVE2, CIR1 | RNA biosynthesis.transcriptional activation.MYB... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g06441 | No alias | transcription factor *(REVEILLE) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g11557 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g22032 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g03179 | RVE2, CIR1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g23475 | RVE1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g09144 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01025544001 | No alias | Multi-process regulation.circadian clock.evening element... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01027456001 | CCA1 | Multi-process regulation.circadian clock.core oscillator... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os02g45670.1 | LOC_Os02g45670 | transcription factor (MYB-related). REVEILLE circadian... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os05g07010.1 | LOC_Os05g07010 | transcription factor (MYB-related) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g01670.1 | LOC_Os06g01670 | transcription factor (MYB-related). REVEILLE circadian... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g51260.1 | RVE2, CIR1,... | transcription factor (MYB-related) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os08g06110.3 | LHY1, LHY, LOC_Os08g06110 | transcription factor (MYB-related). circadian clock core... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g19700 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g14125 | RVE2, CIR1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g26311 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g08270 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g32617 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g15968 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g16347 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g11968 | No alias | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g29515 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g42013 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0034.g011198 | No alias | circadian clock factor *(REVEILLE) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0048.g013571 | RVE1 | transcription factor *(REVEILLE) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0053.g014166 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g12578 | No alias | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g49740 | No alias | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g036370.3.1 | RVE1, Solyc02g036370 | transcription factor (MYB-related) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g098320.4.1 | RVE1, Solyc03g098320 | transcription factor (MYB-related) | 0.06 | OrthoFinder output from all 47 species | |
| Solyc10g005080.3.1 | LHY1, LHY, Solyc10g005080 | transcription factor (MYB-related). circadian clock core... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc10g084370.3.1 | Solyc10g084370 | transcription factor (MYB-related). REVEILLE circadian... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e006465_P001 | Zm00001e006465 | transcription factor (MYB-related) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e013333_P002 | RVE2, CIR1,... | transcription factor (MYB-related) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e021724_P005 | LHY1, LHY, Zm00001e021724 | transcription factor (MYB-related). circadian clock core... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e040217_P001 | LHY1, LHY, Zm00001e040217 | circadian clock core oscillator protein (LHY|CCA1) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0006783 | heme biosynthetic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| MF | GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016757 | glycosyltransferase activity | IEP | HCCA |
| MF | GO:0016758 | hexosyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0042168 | heme metabolic process | IEP | HCCA |
| BP | GO:0042440 | pigment metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| MF | GO:0045300 | acyl-[acyl-carrier-protein] desaturase activity | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046148 | pigment biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |