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  5. Smo166650

Smo166650


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL13a component


Gene families : OG0001291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo166650
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00144180 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
AMTR_s00089p00040540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
AT3G07110 No alias Ribosomal protein L13 family protein 0.19 OrthoFinder output from all 47 species
AT3G24830 No alias Ribosomal protein L13 family protein 0.22 OrthoFinder output from all 47 species
AT4G13170 No alias Ribosomal protein L13 family protein 0.1 OrthoFinder output from all 47 species
AT5G48760 No alias Ribosomal protein L13 family protein 0.22 OrthoFinder output from all 47 species
Adi_g108658 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g124594 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aev_g06438 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g00711 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Als_g12384 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g06902 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Aop_g15634 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g22675 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aspi01Gene32952.t1 Aspi01Gene32952 component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0075.g037721 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Azfi_s0272.g061284 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Azfi_s0594.g078801 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cba_g09451 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.05G058300.1 Ceric.05G058300 component *(uL13) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Ceric.20G024700.1 Ceric.20G024700 component *(uL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.29 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 OrthoFinder output from all 47 species
Cre12.g532550 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Dac_g00316 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Dcu_g06037 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Dcu_g34535 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dde_g02606 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g02053 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01021080001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01028661001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
LOC_Os03g54890.1 LOC_Os03g54890 component RPL13a of LSU proteome component 0.22 OrthoFinder output from all 47 species
Len_g10030 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Len_g17905 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g21734 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_186340g0010 No alias component RPL13a of LSU proteome component 0.2 OrthoFinder output from all 47 species
Mp2g08690.1 No alias component RPL13a of LSU proteome component 0.25 OrthoFinder output from all 47 species
Mp4g15790.1 No alias component RPL13a of LSU proteome component 0.24 OrthoFinder output from all 47 species
Msp_g06781 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Msp_g27149 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g04609 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Nbi_g12434 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g10936 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g10938 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g01822 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pp3c11_17280V3.1 Pp3c11_17280 Ribosomal protein L13 family protein 0.08 OrthoFinder output from all 47 species
Pp3c19_10330V3.1 Pp3c19_10330 Ribosomal protein L13 family protein 0.12 OrthoFinder output from all 47 species
Pp3c1_15830V3.1 Pp3c1_15830 Ribosomal protein L13 family protein 0.11 OrthoFinder output from all 47 species
Pp3c2_20550V3.1 Pp3c2_20550 Ribosomal protein L13 family protein 0.11 OrthoFinder output from all 47 species
Ppi_g25366 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g25630 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g05746 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g06363 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g07579 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g14121 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g14122 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g28928 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g31286 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Sam_g43171 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Solyc05g053670.3.1 Solyc05g053670 component RPL13a of LSU proteome component 0.26 OrthoFinder output from all 47 species
Solyc09g091740.4.1 Solyc09g091740 component RPL13a of LSU proteome component 0.25 OrthoFinder output from all 47 species
Spa_g10532 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Spa_g15627 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Spa_g15628 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Spa_g22049 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Spa_g44762 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g00453 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Tin_g34122 No alias component *(uL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e005719_P002 Zm00001e005719 component RPL13a of LSU proteome component 0.24 OrthoFinder output from all 47 species
Zm00001e012017_P002 Zm00001e012017 component RPL13a of LSU proteome component 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 12 121
No external refs found!