Smo149865

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.RNA helicase activities.Prp28 RNA helicase

Gene families : OG0002793 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002793_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo149865
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
Ehy_g04013	No alias	RNA helicase *(SMA1) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os03g50090.2	LOC_Os03g50090	RNA helicase (Prp28)	0.05	OrthoFinder output from all 47 species
MA_90357g0010	No alias	DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021318	No alias	not classified & original description: CDS=1-195	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0119.g021319	No alias	not classified & original description: CDS=1-1413	0.03	OrthoFinder output from all 47 species
Sam_g29389	No alias	RNA helicase *(SMA1) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g081290.4.1	Solyc02g081290	RNA helicase (Prp28)	0.02	OrthoFinder output from all 47 species
Tin_g02138	No alias	RNA helicase *(SMA1) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005420_P001	Zm00001e005420	RNA helicase (Prp28)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0050662	obsolete coenzyme binding	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	138	328

External Links

No external refs found!