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  5. Smo148107

Smo148107 (EMB1989, RPB2, NRPB2)


Aliases : EMB1989, RPB2, NRPB2

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo148107

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00020p00246930 NRPC2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.07 OrthoFinder output from all 47 species
AMTR_s00068p00181410 EMB1989, RPB2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.05 OrthoFinder output from all 47 species
Aev_g01571 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Aev_g39406 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ala_g05404 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Ala_g21244 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Als_g02614 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Als_g03892 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Als_g07605 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene14109.t1 NRPD2B, Aspi01Gene14109 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15628.t1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene47963.t1 NRPC2, Aspi01Gene47963 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene47966.t1 NRPC2, Aspi01Gene47966 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0114.g046098 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Cba_g01330 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Ceric.30G032600.1 NRPC2, Ceric.30G032600 component *(NRPC2) of RNA polymerase III complex &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000158.16 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Cre02.g075150 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Dac_g02906 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g09431 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.07 OrthoFinder output from all 47 species
Dcu_g32270 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Dde_g01758 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.08 OrthoFinder output from all 47 species
Ehy_g17296 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g24202 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01020543001 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.1 OrthoFinder output from all 47 species
GSVIVT01036596001 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_30006 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.05 OrthoFinder output from all 47 species
LOC_Os03g44484.1 EMB1989, RPB2,... DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.02 OrthoFinder output from all 47 species
Len_g16317 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.06 OrthoFinder output from all 47 species
Len_g29891 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g04274 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g12805 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
MA_10429035g0020 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.04 OrthoFinder output from all 47 species
MA_10429035g0030 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10432131g0010 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.03 OrthoFinder output from all 47 species
MA_342841g0010 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp4g21160.1 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
Mp5g21260.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.03 OrthoFinder output from all 47 species
Msp_g14155 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Msp_g14438 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.02 OrthoFinder output from all 47 species
Nbi_g01478 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Ore_g18280 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.06 OrthoFinder output from all 47 species
Ore_g25703 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.05 OrthoFinder output from all 47 species
Pir_g63659 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g07591 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g16479 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007530 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Sam_g26686 No alias component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Spa_g04426 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e012400_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR007646 RNA_pol_Rpb2_4 559 620
No external refs found!