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Aliases : COL3, ATCOL3
Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor
Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Smo141010 | |
| Cluster | HCCA: Cluster_37 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00073p00061640 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.C2C2... | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g24424 | No alias | CMF transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g09765 | No alias | CMF transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene16706.t1 | Aspi01Gene16706 | CMF transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_02486 | No alias | transcription factor (BBX-CO) | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os06g15330.1 | LOC_Os06g15330 | transcription factor (BBX-CO) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g007210.3.1 | Solyc04g007210 | transcription factor (BBX-CO) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g009310.3.1 | Solyc05g009310 | transcription factor (BBX-CO) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g008540.3.1 | CIA2, Solyc07g008540 | transcription factor (BBX-CO) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| MF | GO:0009916 | alternative oxidase activity | IEP | HCCA |
| BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | HCCA |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | HCCA |
| MF | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | HCCA |
| BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000315 | Znf_B-box | 4 | 48 |
| No external refs found! |