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  5. Smo139717

Smo139717 (NUP96, PRE, SAR3, MOS3)


Aliases : NUP96, PRE, SAR3, MOS3

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP98 nucleoporin


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo139717

Target Alias Description ECC score Gene Family Method Actions
Adi_g014270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086878 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Aob_g11020 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Aop_g08739 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05169.t1 NUP96, PRE,... nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Dac_g07068 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g08969 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g18615 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01019716001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
GSVIVT01031347001 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Len_g11078 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Len_g13759 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.02 OrthoFinder output from all 47 species
Lfl_g30034 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434126g0020 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
MA_62342g0010 No alias NUP98 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Ore_g15205 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.02 OrthoFinder output from all 47 species
Ore_g22018 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Pnu_g13028 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g03244 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Sam_g28559 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR021967 Nup98_C 540 820
No external refs found!