Smo139408 (PGP20)

Aliases : PGP20

Description : Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo139408
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00145p00075460	PGP20,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AT2G36910	PGP1, ABCB1, ATPGP1	ATP binding cassette subfamily B1	0.02	OrthoFinder output from all 47 species
AT2G39480	PGP6	P-glycoprotein 6	0.07	OrthoFinder output from all 47 species
AT3G55320	PGP20	P-glycoprotein 20	0.01	OrthoFinder output from all 47 species
Adi_g019429	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g18719	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g03780	PGP20	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02407	PGP20	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene20592.t1	PGP6, Aspi01Gene20592	subfamily ABCB transporter & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.10G028600.1	PGP20, Ceric.10G028600	subfamily ABCB transporter & original description:...	0.05	OrthoFinder output from all 47 species
Ehy_g21294	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01016617001	PGP20	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01025040001	PGP20	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Gb_20009	PGP6	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
Gb_31652	PGP6	subfamily ABCB transporter	0.07	OrthoFinder output from all 47 species
LOC_Os01g74470.1	PGP20, LOC_Os01g74470	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
LOC_Os03g17180.1	PGP20, LOC_Os03g17180	subfamily ABCB transporter	0.05	OrthoFinder output from all 47 species
Len_g12068	No alias	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Len_g47394	PGP2	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
MA_14136g0010	PGP20	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
MA_40328g0010	PGP20	ABC transporter B family member 20 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Nbi_g19754	ABCB19,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g04820	PGP20	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g01067	PGP6	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g30508	PGP5	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006153	PGP11	subfamily ABCB transporter & original description: CDS=261-4235	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006646	PGP20	subfamily ABCB transporter & original description: CDS=24-3872	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017905	PGP11	not classified & original description: CDS=139-861	0.04	OrthoFinder output from all 47 species
Solyc04g010310.4.1	PGP20, Solyc04g010310	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Spa_g48523	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001258_P003	PGP20, Zm00001e001258	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Zm00001e018488_P001	PGP20, Zm00001e018488	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1136	1284

External Links

No external refs found!

Smo139408 (PGP20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation