1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os02g49880.1

LOC_Os02g49880.1


Description : transcription factor (BBX-CO)


Gene families : OG_01_0000884 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000884_tree ,
OG_02_0000594 (LandPlants) Phylogenetic Tree(s): OG_02_0000594_tree ,
OG_03_0000583 (SeedPlants) Phylogenetic Tree(s): OG_03_0000583_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g49880.1
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.12 Archaeplastida
AMTR_s00049p00156610 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AT1G07050 No alias CCT motif family protein 0.02 Archaeplastida
AT1G68520 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
AT1G73870 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
GSVIVT01010855001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.09 Archaeplastida
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.06 Archaeplastida
LOC_Os03g50310.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
MA_470965g0010 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
Pp3c4_7080V3.1 No alias B-box type zinc finger protein with CCT domain 0.01 Archaeplastida
Pp3c8_1870V3.1 No alias B-box type zinc finger protein with CCT domain 0.03 Archaeplastida
Solyc04g007210.3.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Solyc05g009310.3.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
Solyc07g008540.3.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Zm00001e015732_P002 No alias transcription factor (BBX-CO) 0.06 Archaeplastida
Zm00001e030952_P002 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Zm00001e036760_P001 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
AMTR_s00025p00156240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.09 LandPlants
AMTR_s00049p00156610 evm_27.TU.AmTr_v1... No description available 0.03 LandPlants
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 LandPlants
AT1G68520 No alias B-box type zinc finger protein with CCT domain 0.02 LandPlants
GSVIVT01010855001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 LandPlants
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.07 LandPlants
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 LandPlants
Pp3c4_7080V3.1 No alias B-box type zinc finger protein with CCT domain 0.01 LandPlants
Pp3c8_1870V3.1 No alias B-box type zinc finger protein with CCT domain 0.01 LandPlants
Solyc04g007210.3.1 No alias transcription factor (BBX-CO) 0.04 LandPlants
Solyc05g009310.3.1 No alias transcription factor (BBX-CO) 0.05 LandPlants
Solyc07g008540.3.1 No alias transcription factor (BBX-CO) 0.04 LandPlants
Zm00001e015732_P002 No alias transcription factor (BBX-CO) 0.04 LandPlants
Zm00001e030952_P002 No alias transcription factor (BBX-CO) 0.04 LandPlants
AMTR_s00025p00156240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.08 SeedPlants
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.01 SeedPlants
GSVIVT01010855001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 SeedPlants
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 SeedPlants
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 SeedPlants
Gb_03285 No alias transcription factor (BBX-CO) 0.01 SeedPlants
Solyc04g007210.3.1 No alias transcription factor (BBX-CO) 0.03 SeedPlants
Solyc05g009310.3.1 No alias transcription factor (BBX-CO) 0.05 SeedPlants
Solyc07g008540.3.1 No alias transcription factor (BBX-CO) 0.04 SeedPlants
Zm00001e015732_P002 No alias transcription factor (BBX-CO) 0.04 SeedPlants
Zm00001e030952_P002 No alias transcription factor (BBX-CO) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010402 CCT_domain 399 441
IPR000315 Znf_B-box 18 59
No external refs found!