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  5. Smo120007

Smo120007


Description : CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays


Gene families : OG0001162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001162_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Smo120007
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 ATCFM3A, CFM3A,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00028p00245370 ATCFM2, CFM2,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.05 OrthoFinder output from all 47 species
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.05 OrthoFinder output from all 47 species
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.04 OrthoFinder output from all 47 species
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 OrthoFinder output from all 47 species
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.03 OrthoFinder output from all 47 species
Adi_g059394 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21267 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03895 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06265 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25751 ATCFM2, CFM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0203.g057681 ATCFM2, CFM2 not classified & original description: CDS=1647-4091 0.03 OrthoFinder output from all 47 species
Cba_g11329 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G053300.1 ATCFM2, CFM2,... not classified & original description: pacid=50577844... 0.03 OrthoFinder output from all 47 species
Ceric.23G047600.1 ATCFM2, CFM2,... not classified & original description: pacid=50611491... 0.04 OrthoFinder output from all 47 species
Ceric.31G056300.1 ATCFM2, CFM2,... not classified & original description: pacid=50573909... 0.03 OrthoFinder output from all 47 species
Dcu_g07763 ATCFM2, CFM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25274 ATCFM2, CFM2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g12628 EMB1865 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g21472 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01008296001 EMB1865 CRM-domain containing factor CFM3,... 0.05 OrthoFinder output from all 47 species
GSVIVT01015193001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01018109001 ATCFM3A, CFM3A RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01031001001 ATCRS1, CRS1 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01032542001 ATCFM2, CFM2 RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
Gb_18301 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.02 OrthoFinder output from all 47 species
Gb_18303 ATCFM2, CFM2 CRM-domain containing factor CFM2, chloroplastic... 0.05 OrthoFinder output from all 47 species
Gb_37638 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor. CFM3-type... 0.04 OrthoFinder output from all 47 species
LOC_Os04g39060.2 ATCFM2, CFM2,... CRM-domain containing factor CFM2, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os05g47850.1 EMB1865, LOC_Os05g47850 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g27150.1 ATCRS1, CRS1,... CRS1 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os09g19850.1 LOC_Os09g19850 CRM-domain containing factor CFM3,... 0.03 OrthoFinder output from all 47 species
Len_g55562 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10432072g0010 ATCFM3A, CFM3A CFM2-type plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
MA_10435740g0010 EMB1865 CFM2-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Mp3g06280.1 ATCFM2, CFM2 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Msp_g31203 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10122 ATCFM2, CFM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35546 ATCFM2, CFM2 plastidial RNA splicing factor *(CFM2) & original... 0.05 OrthoFinder output from all 47 species
Ppi_g46980 ATCFM3A, CFM3A not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0160.g023856 ATCFM2, CFM2 not classified & original description: CDS=91-3327 0.02 OrthoFinder output from all 47 species
Solyc03g119450.3.1 EMB1865, Solyc03g119450 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Solyc07g039500.4.1 Solyc07g039500 CRM-domain containing factor CFM3,... 0.07 OrthoFinder output from all 47 species
Solyc09g083350.3.1 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e011272_P001 ATCFM3A, CFM3A,... CFM3-type plastidial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e032339_P002 EMB1865, Zm00001e032339 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Zm00001e033939_P001 Zm00001e033939 CRM-domain containing factor CFM3,... 0.04 OrthoFinder output from all 47 species
Zm00001e041033_P001 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species
Zm00001e041034_P001 ATCFM2, CFM2,... CFM2-type plastidial RNA splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 278 362
No external refs found!