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  5. LOC_Os02g47640.1

LOC_Os02g47640.1


Description : transcription factor (TUB)


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0000341 (SeedPlants) Phylogenetic Tree(s): OG_03_0000341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47640.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
Cpa|evm.model.tig00020603.38 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
GSVIVT01017810001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
Pp3c24_19540V3.1 No alias tubby like protein 3 0.01 Archaeplastida
Smo230435 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Zm00001e007472_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e015581_P001 No alias transcription factor (TUB) 0.05 Archaeplastida
Zm00001e019166_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e023326_P001 No alias transcription factor (TUB) 0.1 Archaeplastida
Zm00001e024653_P002 No alias transcription factor (TUB) 0.03 Archaeplastida
GSVIVT01017810001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
GSVIVT01018940001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
MA_10430830g0020 No alias transcription factor (TUB) 0.01 LandPlants
Pp3c20_2160V3.1 No alias tubby like protein 3 0.01 LandPlants
Pp3c24_19540V3.1 No alias tubby like protein 3 0.01 LandPlants
Smo230435 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.02 LandPlants
Zm00001e015581_P001 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e023326_P001 No alias transcription factor (TUB) 0.09 LandPlants
Zm00001e024653_P002 No alias transcription factor (TUB) 0.03 LandPlants
GSVIVT01017810001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 SeedPlants
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 SeedPlants
MA_10430830g0020 No alias transcription factor (TUB) 0.01 SeedPlants
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.02 SeedPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.02 SeedPlants
Zm00001e015581_P001 No alias transcription factor (TUB) 0.03 SeedPlants
Zm00001e023326_P001 No alias transcription factor (TUB) 0.08 SeedPlants
Zm00001e024653_P002 No alias transcription factor (TUB) 0.03 SeedPlants
Zm00001e031774_P001 No alias transcription factor (TUB) 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000007 Tubby_C 131 423
IPR001810 F-box_dom 68 118
No external refs found!