Smo109207 (TOP1BETA, TOP1)

Aliases : TOP1BETA, TOP1

Description : Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase

Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Smo109207

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00059p00193620	MGO1, TOP1,...	Cell cycle.interphase.DNA replication.preinitiation.TOP1...	0.02	OrthoFinder output from all 47 species
AT5G55300	MGO1, TOP1, TOP1ALPHA	DNA topoisomerase I alpha	0.02	OrthoFinder output from all 47 species
Adi_g088243	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g03385	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g18516	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g13391	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g26199	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.07G062200.1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.22G051300.1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.31G042500.1	TOP1BETA, TOP1,...	DNA topoisomerase *(TOP1) & original description:...	0.07	OrthoFinder output from all 47 species
GSVIVT01020301001	MGO1, TOP1, TOP1ALPHA	Cell cycle.interphase.DNA replication.preinitiation.TOP1...	0.02	OrthoFinder output from all 47 species
Gb_13084	TOP1BETA, TOP1	DNA topoisomerase (TOP1)	0.03	OrthoFinder output from all 47 species
LOC_Os08g05840.1	TOP1BETA, TOP1,...	DNA topoisomerase (TOP1)	0.03	OrthoFinder output from all 47 species
Lfl_g04991	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g25112	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Mp6g05370.1	TOP1BETA, TOP1	DNA topoisomerase (TOP1)	0.04	OrthoFinder output from all 47 species
Msp_g13694	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11791	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g03945	TOP1BETA, TOP1	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g25841	MGO1, TOP1, TOP1ALPHA	DNA topoisomerase *(TOP1) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013500	TopoI_cat_euk	274	493

External Links

No external refs found!

Smo109207 (TOP1BETA, TOP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation