LOC_Os02g47360.1


Description : OTP51 plastidial RNA splicing factor


Gene families : OG_01_0007260 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007260_tree ,
OG_02_0006849 (LandPlants) Phylogenetic Tree(s): OG_02_0006849_tree ,
OG_03_0008359 (SeedPlants) Phylogenetic Tree(s): OG_03_0008359_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g47360.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT2G15820 OTP51 endonucleases 0.09 Archaeplastida
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.04 Archaeplastida
MA_10427446g0010 No alias OTP51 plastidial RNA splicing factor 0.02 Archaeplastida
Smo438810 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.07 Archaeplastida
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.08 Archaeplastida
AT2G15820 OTP51 endonucleases 0.09 LandPlants
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.05 LandPlants
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.04 LandPlants
MA_10427446g0010 No alias OTP51 plastidial RNA splicing factor 0.02 LandPlants
Smo438810 No alias RNA processing.organelle machineries.RNA... 0.03 LandPlants
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.06 LandPlants
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.06 LandPlants
AT2G15820 OTP51 endonucleases 0.09 SeedPlants
GSVIVT01031785001 No alias RNA processing.organelle machineries.RNA... 0.05 SeedPlants
Gb_32793 No alias OTP51 plastidial RNA splicing factor 0.03 SeedPlants
MA_10427446g0010 No alias OTP51 plastidial RNA splicing factor 0.02 SeedPlants
Solyc11g066850.3.1 No alias OTP51 plastidial RNA splicing factor 0.05 SeedPlants
Zm00001e015566_P003 No alias OTP51 plastidial RNA splicing factor 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 191 213
IPR002885 Pentatricopeptide_repeat 512 539
IPR002885 Pentatricopeptide_repeat 476 504
IPR004860 LAGLIDADG_2 576 742
IPR002885 Pentatricopeptide_repeat 371 415
No external refs found!