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  5. LOC_Os02g46980.1

LOC_Os02g46980.1


Description : Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana (sp|q9c6t2|ppr68_arath : 546.0)


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0012944 (LandPlants) Phylogenetic Tree(s): OG_02_0012944_tree ,
OG_03_0012996 (SeedPlants) Phylogenetic Tree(s): OG_03_0012996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g46980.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257020 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
AMTR_s00046p00214930 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
AMTR_s00068p00072270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida
GSVIVT01031251001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
Gb_08890 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.01 Archaeplastida
LOC_Os03g63560.1 No alias OTP70 plastidial RNA splicing factor 0.01 Archaeplastida
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
Smo107260 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.02 Archaeplastida
Smo173139 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Smo78994 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.03 Archaeplastida
Solyc01g095690.2.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.02 Archaeplastida
Solyc02g094480.4.1 No alias RNA editing factor (MEF14) 0.02 Archaeplastida
Solyc04g076800.3.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc08g076150.4.1 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 Archaeplastida
Zm00001e005067_P001 No alias Pentatricopeptide repeat-containing protein At2g42920,... 0.03 Archaeplastida
Zm00001e007462_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
Zm00001e015517_P002 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e022253_P001 No alias Pentatricopeptide repeat-containing protein At1g59720,... 0.11 Archaeplastida
Zm00001e023289_P001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.05 Archaeplastida
Zm00001e030704_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.02 LandPlants
Solyc08g076150.4.1 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 LandPlants
Zm00001e015517_P002 No alias no hits & (original description: none) 0.06 LandPlants
Zm00001e023289_P001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.05 LandPlants
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
GSVIVT01013023001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.02 SeedPlants
Solyc08g076150.4.1 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.03 SeedPlants
Zm00001e015517_P002 No alias no hits & (original description: none) 0.06 SeedPlants
Zm00001e023289_P001 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 479 603
IPR002885 Pentatricopeptide_repeat 306 353
IPR002885 Pentatricopeptide_repeat 101 149
IPR002885 Pentatricopeptide_repeat 381 404
IPR002885 Pentatricopeptide_repeat 208 236
IPR002885 Pentatricopeptide_repeat 177 201
IPR002885 Pentatricopeptide_repeat 412 440
IPR002885 Pentatricopeptide_repeat 280 305
No external refs found!