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  5. LOC_Os12g42150.1

LOC_Os12g42150.1 (LOC_Os12g42150)


Aliases : LOC_Os12g42150

Description : no hits & (original description: none)


Gene families : OG0005154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005154_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g42150.1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT1G65030 No alias Transducin/WD40 repeat-like superfamily protein 0.05 OrthoFinder output from all 47 species
Cba_g17682 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Solyc02g078830.4.1 Solyc02g078830 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g07468 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Zm00001e035650_P002 Zm00001e035650 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 37 73
IPR001680 WD40_repeat 282 297
No external refs found!