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  5. LOC_Os12g41860.1

LOC_Os12g41860.1 (PHB-1D, ATHB-14, PHB,...)


Aliases : PHB-1D, ATHB-14, PHB, ATHB14, LOC_Os12g41860

Description : transcription factor (HD-ZIP III)


Gene families : OG0000446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g41860.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00085520 ICU4, ATHB15,... RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
AMTR_s00148p00033940 PHB-1D, ATHB-14,... RNA biosynthesis.transcriptional activation.HB... 0.06 OrthoFinder output from all 47 species
AMTR_s00155p00069240 PHB-1D, ATHB-14,... RNA biosynthesis.transcriptional activation.HB... 0.08 OrthoFinder output from all 47 species
AT2G34710 PHB-1D, ATHB-14,... Homeobox-leucine zipper family protein / lipid-binding... 0.04 OrthoFinder output from all 47 species
AT4G32880 HB-8, ATHB8, ATHB-8 homeobox gene 8 0.04 OrthoFinder output from all 47 species
AT5G60690 IFL1, IFL, REV Homeobox-leucine zipper family protein / lipid-binding... 0.06 OrthoFinder output from all 47 species
Adi_g022450 PHB-1D, ATHB-14,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g126999 HB-8, ATHB8, ATHB-8 transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07482 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25553 PHB-1D, ATHB-14,... transcriptional co-regulator *(ZPR) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06579 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07212 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09861 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17712 ICU4, ATHB15,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27486 ICU4, ATHB15,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33687 HB-8, ATHB8, ATHB-8 HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g39406 PHB-1D, ATHB-14,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46485 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50584 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g20866 PHB-1D, ATHB-14,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22190 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26987 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05567 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06100 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g37722 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47508.t1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61236.t1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0047.g030268 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original... 0.02 OrthoFinder output from all 47 species
Cba_g22007 HB-8, ATHB8, ATHB-8 transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22860 PHB-1D, ATHB-14,... HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g23262 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g28120 PHB-1D, ATHB-14,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45098 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g60655 ICU4, ATHB15,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G076100.1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.17G020900.1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Ceric.17G083000.1 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original... 0.04 OrthoFinder output from all 47 species
Ceric.18G068400.1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.23G045900.1 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original... 0.02 OrthoFinder output from all 47 species
Dac_g12691 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g38205 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11576 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47759 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017010001 ICU4, ATHB15,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01021625001 PHB-1D, ATHB-14,... RNA biosynthesis.transcriptional activation.HB... 0.08 OrthoFinder output from all 47 species
GSVIVT01025193001 IFL1, IFL, REV RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
GSVIVT01035612001 ICU4, ATHB15,... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
Gb_02083 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Gb_10259 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Len_g10271 HB-8, ATHB8, ATHB-8 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10334 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26487 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Mp1g24140.1 HB-8, ATHB8, ATHB-8 transcription factor (HD-ZIP III) 0.06 OrthoFinder output from all 47 species
Msp_g26097 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05442 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19565 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02329 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006550 PHB-1D, ATHB-14,... transcriptional co-regulator *(ZPR) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021492 HB-8, ATHB8, ATHB-8 not classified & original description: CDS=1-1650 0.04 OrthoFinder output from all 47 species
Sam_g08842 No alias transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08843 No alias transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10819 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g12564 No alias HD-ZIP III-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g39110 No alias HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Smo77000 PHB-1D, ATHB-14,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Solyc02g024070.3.1 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.08 OrthoFinder output from all 47 species
Solyc03g120910.4.1 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.04 OrthoFinder output from all 47 species
Solyc08g066500.4.1 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.04 OrthoFinder output from all 47 species
Solyc11g069470.3.1 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Solyc12g044410.2.1 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Spa_g08598 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000073_P001 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.07 OrthoFinder output from all 47 species
Zm00001e003226_P004 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.05 OrthoFinder output from all 47 species
Zm00001e004553_P004 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.11 OrthoFinder output from all 47 species
Zm00001e005034_P001 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.1 OrthoFinder output from all 47 species
Zm00001e012408_P002 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.04 OrthoFinder output from all 47 species
Zm00001e018118_P002 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.08 OrthoFinder output from all 47 species
Zm00001e025995_P002 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Zm00001e039093_P002 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR013978 MEKHLA 712 854
IPR002913 START_lipid-bd_dom 178 385
IPR001356 Homeobox_dom 30 87
No external refs found!