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  5. LOC_Os12g41620.1

LOC_Os12g41620.1 (LOC_Os12g41620)


Aliases : LOC_Os12g41620

Description : no hits & (original description: none)


Gene families : OG0005210 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g41620.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00157140 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT2G18900 No alias Transducin/WD40 repeat-like superfamily protein 0.2 OrthoFinder output from all 47 species
Adi_g085575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49455.t1 Aspi01Gene49455 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0026.g023316 No alias not classified & original description: CDS=130-2748 0.1 OrthoFinder output from all 47 species
Ceric.03G099700.1 Ceric.03G099700 not classified & original description: pacid=50571866... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.131 No alias No description available 0.07 OrthoFinder output from all 47 species
Cre04.g215350 No alias No description available 0.2 OrthoFinder output from all 47 species
Dcu_g38097 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01030738001 No alias No description available 0.14 OrthoFinder output from all 47 species
Len_g01894 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428181g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_40164g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_9860436g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp7g09630.1 No alias no hits & (original description: none) 0.18 OrthoFinder output from all 47 species
Msp_g14500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g33579 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo166499 No alias No description available 0.11 OrthoFinder output from all 47 species
Solyc07g066410.4.1 Solyc07g066410 no hits & (original description: none) 0.25 OrthoFinder output from all 47 species
Spa_g25780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003211_P001 Zm00001e003211 no hits & (original description: none) 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 269 300
No external refs found!