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  5. LOC_Os12g40120.1

LOC_Os12g40120.1 (LOC_Os12g40120)


Aliases : LOC_Os12g40120

Description : transcription factor (REM)


Gene families : OG0004345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004345_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g40120.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00193040 evm_27.TU.AmTr_v1... B3 domain-containing protein Os11g0197600 OS=Oryza... 0.03 OrthoFinder output from all 47 species
AT1G49475 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
AT3G18960 No alias AP2/B3-like transcriptional factor family protein 0.07 OrthoFinder output from all 47 species
GSVIVT01005085001 No alias B3 domain-containing transcription factor VRN1... 0.05 OrthoFinder output from all 47 species
GSVIVT01005087001 No alias B3 domain-containing transcription factor VRN1... 0.03 OrthoFinder output from all 47 species
Gb_37792 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Pir_g27406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g081780.3.1 Solyc02g081780 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc04g015500.3.1 Solyc04g015500 B3 domain-containing transcription factor VRN1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 252 348
IPR003340 B3_DNA-bd 37 117
No external refs found!