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  5. LOC_Os12g38620.1

LOC_Os12g38620.1 (TAF8, LOC_Os12g38620)


Aliases : TAF8, LOC_Os12g38620

Description : component TAF8 of TFIId basal transcription regulation complex


Gene families : OG0002836 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002836_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g38620.1

Target Alias Description ECC score Gene Family Method Actions
Cba_g01010 TAF8 component *(TAF8) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Ceric.23G030000.1 Ceric.23G030000 component *(TAF8) of TFIId basal transcription... 0.04 OrthoFinder output from all 47 species
Dac_g15429 TAF8 component *(TAF8) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Ehy_g18699 TAF8 component *(TAF8) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
GSVIVT01025729001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01032913001 TAF8 RNA biosynthesis.RNA polymerase II-dependent... 0.06 OrthoFinder output from all 47 species
Len_g12286 TAF8 component *(TAF8) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Len_g29949 TAF8 component *(TAF8) of TFIId basal transcription... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005998 TAF8 component *(TAF8) of TFIId basal transcription... 0.02 OrthoFinder output from all 47 species
Solyc09g008150.3.1 TAF8, Solyc09g008150 component TAF8 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species
Tin_g08709 TAF8 component *(TAF8) of TFIId basal transcription... 0.04 OrthoFinder output from all 47 species
Zm00001e018349_P001 TAF8, Zm00001e018349 component TAF8 of TFIId basal transcription regulation complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR019473 TFIID_su8_C 158 206
IPR006565 BTP 20 91
No external refs found!