LOC_Os12g38200.1 (LOC_Os12g38200)


Aliases : LOC_Os12g38200

Description : transcription factor (DOF)


Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g38200.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264070 CDF3,... RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
AMTR_s00059p00213350 ADOF1, DOF1,... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AMTR_s00069p00049300 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AT1G07640 OBP2 Dof-type zinc finger DNA-binding family protein 0.03 OrthoFinder output from all 47 species
AT1G28310 No alias Dof-type zinc finger DNA-binding family protein 0.02 OrthoFinder output from all 47 species
AT1G29160 No alias Dof-type zinc finger DNA-binding family protein 0.04 OrthoFinder output from all 47 species
AT2G34140 No alias Dof-type zinc finger DNA-binding family protein 0.03 OrthoFinder output from all 47 species
AT2G37590 DOF2.4, ATDOF2.4 DNA binding with one finger 2.4 0.04 OrthoFinder output from all 47 species
AT2G46590 DAG2 Dof-type zinc finger DNA-binding family protein 0.04 OrthoFinder output from all 47 species
AT3G45610 No alias Dof-type zinc finger DNA-binding family protein 0.03 OrthoFinder output from all 47 species
AT3G52440 No alias Dof-type zinc finger DNA-binding family protein 0.03 OrthoFinder output from all 47 species
AT3G55370 OBP3 OBF-binding protein 3 0.06 OrthoFinder output from all 47 species
AT3G61850 DAG1 Dof-type zinc finger DNA-binding family protein 0.07 OrthoFinder output from all 47 species
AT4G24060 No alias Dof-type zinc finger DNA-binding family protein 0.03 OrthoFinder output from all 47 species
AT4G38000 DOF4.7 DNA binding with one finger 4.7 0.03 OrthoFinder output from all 47 species
AT5G60200 TMO6 TARGET OF MONOPTEROS 6 0.05 OrthoFinder output from all 47 species
AT5G65590 No alias Dof-type zinc finger DNA-binding family protein 0.03 OrthoFinder output from all 47 species
AT5G66940 No alias Dof-type zinc finger DNA-binding family protein 0.04 OrthoFinder output from all 47 species
Adi_g007394 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081944 OBP4 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086972 No alias transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g113482 CDF3 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11360 CDF3 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11555 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14647 ADOF2, DOF2 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09379 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14669 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene26374.t1 Aspi01Gene26374 transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0176.g056104 No alias transcription factor *(DOF) & original description: CDS=1-1632 0.02 OrthoFinder output from all 47 species
Azfi_s0197.g057380 ADOF1, DOF1 transcription factor *(DOF) & original description: CDS=242-1003 0.02 OrthoFinder output from all 47 species
Azfi_s1074.g096912 TMO6 transcription factor *(DOF) & original description: CDS=1-1176 0.03 OrthoFinder output from all 47 species
Cba_g39110 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G014800.1 Ceric.11G014800 transcription factor *(DOF) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.12G042700.1 TMO6, Ceric.12G042700 transcription factor *(DOF) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.19G013700.1 TMO6, Ceric.19G013700 transcription factor *(DOF) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.19G053600.1 ADOF1, DOF1,... transcription factor *(DOF) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.31G015700.1 TMO6, Ceric.31G015700 transcription factor *(DOF) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.35G046000.1 OBP4, Ceric.35G046000 transcription factor *(DOF) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g22945 No alias transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18747 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27128 CDF3 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003947001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01005057001 TMO6 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01007758001 HCA2, DOF5.6 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01016538001 OBP3 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01021086001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
GSVIVT01021212001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 OrthoFinder output from all 47 species
GSVIVT01025119001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.07 OrthoFinder output from all 47 species
Gb_12877 HCA2, DOF5.6 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Gb_20144 HCA2, DOF5.6 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Gb_20867 CDF3 Cyclic dof factor 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_16692g0010 TMO6 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
MA_56828g0010 No alias transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
MA_83624g0010 TMO6 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Mp2g20790.1 TMO6 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Pir_g28297 TMO6 transcription factor *(DOF) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03112 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g06441 CDF2 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10910 CDF1 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11813 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18787 TMO6 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03743 ADOF1, DOF1 transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g09266 No alias transcription factor *(DOF) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61204 OBP4 transcription factor *(DOF) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008715 TMO6 transcription factor *(DOF) & original description: CDS=1-1413 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012148 ADOF1, DOF1 transcription factor *(DOF) & original description: CDS=1-1128 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012351 ADOF1, DOF1 transcription factor *(DOF) & original description: CDS=1-1632 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012870 TMO6 transcription factor *(DOF) & original description: CDS=1-1464 0.03 OrthoFinder output from all 47 species
Sam_g50082 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g096120.3.1 DAG1, Solyc01g096120 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Solyc02g065290.1.1 Solyc02g065290 transcription factor (DOF) 0.07 OrthoFinder output from all 47 species
Solyc02g077950.3.1 Solyc02g077950 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Solyc02g077960.3.1 TMO6, Solyc02g077960 transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Solyc02g078620.1.1 ADOF2, DOF2,... transcription factor (DOF) 0.02 OrthoFinder output from all 47 species
Solyc02g090220.3.1 OBP1, Solyc02g090220 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Solyc03g112930.3.1 HCA2, DOF5.6,... transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Solyc03g115940.4.1 CDF3, Solyc03g115940 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Solyc06g071480.3.1 HCA2, DOF5.6,... transcription factor (DOF) 0.08 OrthoFinder output from all 47 species
Solyc06g075370.3.1 TMO6, Solyc06g075370 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Solyc06g076030.3.1 Solyc06g076030 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Solyc09g010680.3.1 Solyc09g010680 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Solyc10g009360.4.1 DAG1, Solyc10g009360 transcription factor (DOF) 0.07 OrthoFinder output from all 47 species
Solyc11g066050.1.1 Solyc11g066050 transcription factor (DOF) 0.07 OrthoFinder output from all 47 species
Solyc11g072500.2.1 TMO6, Solyc11g072500 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Zm00001e002951_P002 Zm00001e002951 transcription factor (DOF) 0.09 OrthoFinder output from all 47 species
Zm00001e003086_P001 ADOF1, DOF1,... transcription factor (DOF) 0.06 OrthoFinder output from all 47 species
Zm00001e003414_P001 OBP1, Zm00001e003414 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e004476_P002 Zm00001e004476 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e005107_P001 ADOF1, DOF1,... transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Zm00001e005785_P001 ADOF2, DOF2,... transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e006190_P001 Zm00001e006190 transcription factor (DOF) 0.05 OrthoFinder output from all 47 species
Zm00001e007228_P002 Zm00001e007228 transcription factor (DOF) 0.1 OrthoFinder output from all 47 species
Zm00001e010454_P001 TMO6, Zm00001e010454 transcription factor (DOF) 0.07 OrthoFinder output from all 47 species
Zm00001e011750_P002 Zm00001e011750 transcription factor (DOF) 0.11 OrthoFinder output from all 47 species
Zm00001e015414_P004 Zm00001e015414 transcription factor (DOF) 0.06 OrthoFinder output from all 47 species
Zm00001e015597_P001 HCA2, DOF5.6,... transcription factor (DOF) 0.06 OrthoFinder output from all 47 species
Zm00001e018163_P001 Zm00001e018163 transcription factor (DOF) 0.11 OrthoFinder output from all 47 species
Zm00001e019764_P001 Zm00001e019764 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e023218_P004 Zm00001e023218 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Zm00001e023334_P001 HCA2, DOF5.6,... transcription factor (DOF) 0.11 OrthoFinder output from all 47 species
Zm00001e027411_P001 Zm00001e027411 transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Zm00001e027634_P002 OBP3, Zm00001e027634 transcription factor (DOF) 0.08 OrthoFinder output from all 47 species
Zm00001e029641_P001 OBP3, Zm00001e029641 transcription factor (DOF) 0.11 OrthoFinder output from all 47 species
Zm00001e031750_P001 Zm00001e031750 transcription factor (DOF) 0.03 OrthoFinder output from all 47 species
Zm00001e034454_P001 ADOF1, DOF1,... transcription factor (DOF) 0.04 OrthoFinder output from all 47 species
Zm00001e035074_P001 TMO6, Zm00001e035074 transcription factor (DOF) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003851 Znf_Dof 94 148
No external refs found!