LOC_Os12g34062.1 (LOC_Os12g34062)

Aliases : LOC_Os12g34062

Description : component mtRPS12 of small ribosomal subunit proteome

Gene families : OG0008286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008286_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g34062.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G07675	No alias	Ribosomal protein S12/S23 family protein	0.05	OrthoFinder output from all 47 species
ATMG00980	RPSL2	Ribosomal protein S12/S23 family protein	0.05	OrthoFinder output from all 47 species
Aev_g16236	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aob_g13504	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Cba_g12837	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.01G057700.1	Ceric.01G057700	not classified & original description: pacid=50591871...	0.07	OrthoFinder output from all 47 species
Ceric.02G004700.1	Ceric.02G004700	not classified & original description: pacid=50584292...	0.06	OrthoFinder output from all 47 species
Ceric.05G040300.1	Ceric.05G040300	component *(uS12c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.05G043100.1	Ceric.05G043100	not classified & original description: pacid=50578321...	0.07	OrthoFinder output from all 47 species
Ceric.18G054400.1	Ceric.18G054400	not classified & original description: pacid=50621895...	0.06	OrthoFinder output from all 47 species
Dcu_g49424	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Solyc00g500069.1.1	RPS12A, RPS12,...	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc00g500254.1.1	RPL20, Solyc00g500254	50S ribosomal protein L20, chloroplastic OS=Coffea...	0.03	OrthoFinder output from all 47 species
Spa_g48002	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	12	123

External Links

No external refs found!

LOC_Os12g34062.1 (LOC_Os12g34062)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation