LOC_Os12g32620.1 (WLIM1, LOC_Os12g32620)


Aliases : WLIM1, LOC_Os12g32620

Description : transcription factor (LIM)


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g32620.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259550 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
AMTR_s00065p00168710 WLIM1,... RNA biosynthesis.transcriptional activation.LIM... 0.05 OrthoFinder output from all 47 species
AT1G01780 No alias GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G10200 WLIM1 GATA type zinc finger transcription factor family protein 0.05 OrthoFinder output from all 47 species
AT2G39900 No alias GATA type zinc finger transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g106595 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g02798 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11262 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21872 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51386 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21791 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27190 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01000 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G010100.1 Ceric.07G010100 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.11G018100.1 WLIM1, Ceric.11G018100 LIM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.14G035600.1 WLIM1, Ceric.14G035600 LIM-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g37425 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g30378 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39812 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g14000 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03212 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03324 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05410 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05547 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27988 WLIM1 LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01019807001 No alias RNA biosynthesis.transcriptional activation.LIM... 0.05 OrthoFinder output from all 47 species
Gb_11447 WLIM1 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Len_g14961 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g10239 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06617 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08756 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21254 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16712 WLIM1 LIM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g23708 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09208 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g55548 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04414 WLIM1 LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001741 WLIM1 LIM-type transcription factor & original description: CDS=1-612 0.04 OrthoFinder output from all 47 species
Smo229974 No alias RNA biosynthesis.transcriptional activation.LIM... 0.02 OrthoFinder output from all 47 species
Solyc06g071310.4.1 WLIM1, Solyc06g071310 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species
Spa_g01071 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22148 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g27853 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53439 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g04312 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e018310_P001 WLIM1, Zm00001e018310 transcription factor (LIM) 0.05 OrthoFinder output from all 47 species
Zm00001e029431_P002 WLIM1, Zm00001e029431 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 110 164
IPR001781 Znf_LIM 12 66
No external refs found!