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  5. LOC_Os12g21880.1

LOC_Os12g21880.1 (AGL62, LOC_Os12g21880)


Aliases : AGL62, LOC_Os12g21880

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g21880.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g072612 AGL16 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g123786 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15929 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g23910.1 AGL16, LOC_Os04g23910 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Len_g09672 AGL104 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g20331 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
MA_141872g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_254338g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.06 OrthoFinder output from all 47 species
MA_7858089g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_886752g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g16570 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06487 No alias MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g39864 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e033123_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e038096_P002 SOC1, AGL20,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 14 60
No external refs found!