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  5. LOC_Os12g18640.1

LOC_Os12g18640.1 (LOC_Os12g18640)


Aliases : LOC_Os12g18640

Description : psbJ/psbN-translation activator (LPE1)


Gene families : OG0007915 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007915_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g18640.1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Ala_g14659 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g39178 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
Spa_g12493 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 364 520
IPR002885 Pentatricopeptide_repeat 186 233
IPR002885 Pentatricopeptide_repeat 530 578
IPR002885 Pentatricopeptide_repeat 114 140
No external refs found!