LOC_Os12g17900.1 (PUB44, SAUL1,...)

Aliases : PUB44, SAUL1, ATPUB44, LOC_Os12g17900

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0001077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001077_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g17900.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00119020	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
AMTR_s00044p00145170	PUB44, SAUL1,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Adi_g017421	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g023614	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03391	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g04473	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07785	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g11521	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene33358.t1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene70545.t1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0068.g036412	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=255-3365	0.06	OrthoFinder output from all 47 species
Azfi_s0111.g045660	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=666-3779	0.02	OrthoFinder output from all 47 species
Cba_g05316	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g13723	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G039300.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.03G046500.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.03G047200.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.14G057700.1	PUB44, SAUL1,...	E3 ubiquitin ligase *(SAUL) & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g02902	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g10711	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g03175	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01010123001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01013395001	PUB44, SAUL1, ATPUB44	Protein degradation.peptide tagging.Ubiquitin...	0.07	OrthoFinder output from all 47 species
Gb_23646	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
LOC_Os06g16410.1	LOC_Os06g16410	E3 ubiquitin ligase (PUB)	0.06	OrthoFinder output from all 47 species
Lfl_g03394	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
MA_99491g0010	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Nbi_g28889	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g15288	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g02409	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0146.g023040	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: CDS=347-3472	0.03	OrthoFinder output from all 47 species
Sam_g16188	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g35802	No alias	E3 ubiquitin ligase *(SAUL) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g082570.3.1	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Spa_g05726	PUB44, SAUL1, ATPUB44	E3 ubiquitin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g02165	No alias	E3 ubiquiTin ligase *(SAUL) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g42066	PUB44, SAUL1, ATPUB44	E3 ubiquiTin ligase *(SAUL) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e036817_P002	Zm00001e036817	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Zm00001e039535_P001	PUB44, SAUL1,...	E3 ubiquitin ligase (PUB)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	23	97

External Links

No external refs found!

LOC_Os12g17900.1 (PUB44, SAUL1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation