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  5. LOC_Os12g09580.1

LOC_Os12g09580.1 (ATSGS3, SGS3, LOC_Os12g09580)


Aliases : ATSGS3, SGS3, LOC_Os12g09580

Description : SGS3 stabilization factor of DNA methylation pathway


Gene families : OG0002879 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002879_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g09580.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g021935 ATSGS3, SGS3 stabilization factor *(SGS3) of transacting siRNA... 0.03 OrthoFinder output from all 47 species
MA_4292002g0010 ATSGS3, SGS3 SGS3 stabilization factor of DNA methylation pathway 0.02 OrthoFinder output from all 47 species
Ore_g32565 ATSGS3, SGS3 stabilization factor *(SGS3) of transacting siRNA... 0.02 OrthoFinder output from all 47 species
Solyc04g025300.3.1 ATSGS3, SGS3,... SGS3 stabilization factor of DNA methylation pathway 0.03 OrthoFinder output from all 47 species
Zm00001e029397_P002 ATSGS3, SGS3,... SGS3 stabilization factor of DNA methylation pathway 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031047 RNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR005380 XS_domain 277 392
IPR005381 Znf-XS_domain 207 245
No external refs found!