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  5. LOC_Os12g08830.1

LOC_Os12g08830.1 (LOC_Os12g08830)


Aliases : LOC_Os12g08830

Description : PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana (sp|o49292|ppd4_arath : 306.0)


Gene families : OG0006741 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006741_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g08830.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00074520 evm_27.TU.AmTr_v1... PsbP domain-containing protein 4, chloroplastic... 0.03 OrthoFinder output from all 47 species
AT1G77090 No alias Mog1/PsbP/DUF1795-like photosystem II reaction center... 0.15 OrthoFinder output from all 47 species
Adi_g018578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g31777 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g01112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01125 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g08421 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene57621.t1 Aspi01Gene57621 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Cba_g10334 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.35G021700.1 Ceric.35G021700 not classified & original description: pacid=50580848... 0.1 OrthoFinder output from all 47 species
Dac_g00401 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g14466 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g04309 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01010018001 No alias PsbP domain-containing protein 4, chloroplastic... 0.12 OrthoFinder output from all 47 species
Len_g04660 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g35597 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10428945g0010 No alias PsbP domain-containing protein 4, chloroplastic... 0.04 OrthoFinder output from all 47 species
Mp1g26600.1 No alias PsbP domain-containing protein 4, chloroplastic... 0.02 OrthoFinder output from all 47 species
Msp_g02718 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g26017 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g01184 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g16097 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g07734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g064670.3.1 Solyc04g064670 PsbP domain-containing protein 4, chloroplastic... 0.08 OrthoFinder output from all 47 species
Spa_g19157 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g03853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0019898 extrinsic component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002683 PsbP_C 131 272
No external refs found!