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  5. LOC_Os12g08220.1

LOC_Os12g08220.1 (ATHDA14, hda14, LOC_Os12g08220)


Aliases : ATHDA14, hda14, LOC_Os12g08220

Description : class-II histone deacetylase


Gene families : OG0006068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g08220.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00054p00095350 ATHDA14, hda14,... Chromatin organisation.histone modifications.histone... 0.07 OrthoFinder output from all 47 species
AT4G33470 ATHDA14, hda14 histone deacetylase 14 0.06 OrthoFinder output from all 47 species
Aev_g03857 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g53688 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17399 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene67945.t1 ATHDA14, hda14,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38945 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g00560 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026467001 ATHDA14, hda14 Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
Lfl_g05964 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.05 OrthoFinder output from all 47 species
MA_10435687g0010 ATHDA14, hda14 class-II histone deacetylase 0.07 OrthoFinder output from all 47 species
Msp_g18920 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19601 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g06418 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Smo179763 ATHDA14, hda14 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Solyc01g009120.3.1 ATHDA14, hda14,... class-II histone deacetylase 0.03 OrthoFinder output from all 47 species
Spa_g09807 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 100 403
No external refs found!