1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g06830.1

LOC_Os12g06830.1 (LOC_Os12g06830)


Aliases : LOC_Os12g06830

Description : Citrate-binding protein OS=Hevea brasiliensis (sp|q39962|cbpr_hevbr : 147.0)


Gene families : OG0006876 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006876_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g06830.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00081530 evm_27.TU.AmTr_v1... Citrate-binding protein OS=Hevea brasiliensis 0.11 OrthoFinder output from all 47 species
AMTR_s00040p00082580 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Als_g63079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g53446 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene62773.t1 Aspi01Gene62773 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g43755 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g52258 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g29827 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01026633001 No alias Citrate-binding protein OS=Hevea brasiliensis 0.04 OrthoFinder output from all 47 species
Gb_26348 No alias Citrate-binding protein OS=Hevea brasiliensis... 0.01 OrthoFinder output from all 47 species
Gb_26357 No alias Citrate-binding protein OS=Hevea brasiliensis... 0.04 OrthoFinder output from all 47 species
LOC_Os12g07310.1 LOC_Os12g07310 Citrate-binding protein OS=Hevea brasiliensis... 0.04 OrthoFinder output from all 47 species
LOC_Os12g07340.1 LOC_Os12g07340 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g53561 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g25661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024267 No alias not classified & original description: CDS=1-279 0.03 OrthoFinder output from all 47 species
Solyc11g005480.2.1 Solyc11g005480 Citrate-binding protein OS=Hevea brasiliensis... 0.03 OrthoFinder output from all 47 species
Spa_g31718 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR014895 Alginate_lyase_2 90 190
No external refs found!