LOC_Os12g03790.1 (LOC_Os12g03790)


Aliases : LOC_Os12g03790

Description : no hits & (original description: none)


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g03790.1
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00037p00211650 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00046p00191970 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00046p00193590 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G09880 No alias Rhamnogalacturonate lyase family protein 0.02 OrthoFinder output from all 47 species
AT1G09890 No alias Rhamnogalacturonate lyase family protein 0.03 OrthoFinder output from all 47 species
Adi_g126576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G076800.1 Ceric.18G076800 not classified & original description: pacid=50622194... 0.04 OrthoFinder output from all 47 species
Dcu_g04778 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g18808 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01006298001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01006302001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01012710001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_00786 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Gb_00787 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os08g44040.1 LOC_Os08g44040 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_10427585g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10434775g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_228529g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_2550g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g13570.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp2g13580.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g20220.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g23380.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g11130.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g11760.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g44605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo413794 No alias No description available 0.03 OrthoFinder output from all 47 species
Smo413798 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc04g076640.3.1 Solyc04g076640 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc04g076650.2.1 Solyc04g076650 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc05g051350.2.1 Solyc05g051350 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g011280.3.1 Solyc11g011280 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc11g011290.3.1 Solyc11g011290 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g011300.2.1 Solyc11g011300 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Tin_g04644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013992_P006 Zm00001e013992 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0019139 cytokinin dehydrogenase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 415 485
IPR010325 Rhamnogal_lyase 51 257
IPR029411 RG-lyase_III 499 686
No external refs found!