1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g02620.1

LOC_Os12g02620.1 (LOC_Os12g02620)


Aliases : LOC_Os12g02620

Description : E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum (sp|p0ch30|ring1_goshi : 113.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os12g02620.1
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Adi_g008105 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0038.g026224 No alias not classified & original description: CDS=1-687 0.03 OrthoFinder output from all 47 species
Cba_g03176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16758 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g23378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g20588 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Pir_g36158 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36482 ATCRT1 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g11589 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Smo18753 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Spa_g26018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23873 No alias RING-H2-class BTL-subclass E3 ubiquiTin ligase &... 0.02 OrthoFinder output from all 47 species
Zm00001e004520_P001 Zm00001e004520 E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 334 375
No external refs found!