LOC_Os12g02380.1 (LOC_Os12g02380)

Aliases : LOC_Os12g02380

Description : EF-P translation elongation factor

Gene families : OG0006339 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006339_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os12g02380.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G08740	No alias	elongation factor P (EF-P) family protein	0.09	OrthoFinder output from all 47 species
Adi_g010197	No alias	translation elongation factor *(EF-P) & original...	0.02	OrthoFinder output from all 47 species
Ala_g04273	No alias	translation elongation factor *(EF-P) & original...	0.03	OrthoFinder output from all 47 species
Aop_g13148	No alias	translation elongation factor *(EF-P) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0359.g066840	No alias	translation elongation factor *(EF-P) & original...	0.06	OrthoFinder output from all 47 species
Ceric.24G041300.1	Ceric.24G041300	translation elongation factor *(EF-P) & original...	0.09	OrthoFinder output from all 47 species
Dcu_g11332	No alias	translation elongation factor *(EF-P) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01030181001	No alias	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Lfl_g12882	No alias	translation elongation factor *(EF-P) & original...	0.05	OrthoFinder output from all 47 species
Mp4g02120.1	No alias	EF-P translation elongation factor	0.11	OrthoFinder output from all 47 species
Msp_g01862	No alias	translation elongation factor *(EF-P) & original...	0.05	OrthoFinder output from all 47 species
Nbi_g06931	No alias	translation elongation factor *(EF-P) & original...	0.03	OrthoFinder output from all 47 species
Ore_g18750	No alias	translation elongation factor *(EF-P) & original...	0.02	OrthoFinder output from all 47 species
Pir_g19280	No alias	translation elongation factor *(EF-P) & original...	0.02	OrthoFinder output from all 47 species
Sam_g14867	No alias	translation elongation factor *(EF-P) & original...	0.02	OrthoFinder output from all 47 species
Solyc10g075020.3.1	Solyc10g075020	EF-P translation elongation factor	0.1	OrthoFinder output from all 47 species
Spa_g11669	No alias	translation elongation factor *(EF-P) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e039313_P003	Zm00001e039313	EF-P translation elongation factor	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003746	translation elongation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006414	translational elongation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015365	Elong-fact-P_C	174	228
IPR013185	Transl_elong_KOW-like	48	104
IPR001059	Transl_elong_P/YeiP_cen	116	166

External Links

No external refs found!

LOC_Os12g02380.1 (LOC_Os12g02380)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation