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  5. LOC_Os11g43480.1

LOC_Os11g43480.1 (LOC_Os11g43480)


Aliases : LOC_Os11g43480

Description : no description available(sp|q2qzf1|pik6_orysj : 139.0)


Gene families : OG0013523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013523_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g43480.1
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g34750.1 LOC_Os07g34750 no description available(sp|q2qzf1|pik6_orysj : 97.8) 0.05 OrthoFinder output from all 47 species
LOC_Os11g43250.1 LOC_Os11g43250 no description available(sp|q2qzf1|pik6_orysj : 89.0) 0.04 OrthoFinder output from all 47 species
LOC_Os11g43410.1 LOC_Os11g43410 no description available(sp|q2qzf1|pik6_orysj : 146.0) 0.05 OrthoFinder output from all 47 species
LOC_Os11g43500.1 LOC_Os11g43500 no description available(sp|q2qzf1|pik6_orysj : 127.0) 0.09 OrthoFinder output from all 47 species
LOC_Os11g43770.1 LOC_Os11g43770 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041118 Rx_N 9 88
No external refs found!