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  5. LOC_Os11g39020.1

LOC_Os11g39020.1 (ATGCN5, GCN5, LOC_Os11g39020)


Aliases : ATGCN5, GCN5, LOC_Os11g39020

Description : ABC transporter F family member 5 OS=Arabidopsis thaliana (sp|q9lv93|ab5f_arath : 739.0)


Gene families : OG0003045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g39020.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00247660 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G64840 ATGCN5, GCN5 general control non-repressible 5 0.19 OrthoFinder output from all 47 species
Adi_g057121 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g05120 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g12591 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04195 ATGCN5, GCN5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g16234 ATGCN5, GCN5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02291 ATGCN5, GCN5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07329 ATGCN5, GCN5 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene62480.t1 ATGCN5, GCN5,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0168.g054635 ATGCN5, GCN5 not classified & original description: CDS=239-2245 0.06 OrthoFinder output from all 47 species
Cba_g38272 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.29G008900.1 ATGCN5, GCN5,... not classified & original description: pacid=50624672... 0.11 OrthoFinder output from all 47 species
Cre06.g265100 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre08.g372250 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Dac_g12683 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g28626 ATGCN5, GCN5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07651 ATGCN5, GCN5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g07834 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01022235001 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_01082 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_01083 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g13114 ATGCN5, GCN5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g58557 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07903 ATGCN5, GCN5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_10437027g0010 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp7g11090.1 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Msp_g14610 ATGCN5, GCN5 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Nbi_g11528 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g30372 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09728 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11340 ATGCN5, GCN5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15434 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020515 ATGCN5, GCN5 not classified & original description: CDS=75-2189 0.03 OrthoFinder output from all 47 species
Sam_g19383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g051800.3.1 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Spa_g18685 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g11682 ATGCN5, GCN5 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e011297_P001 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis... 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 439 570
IPR032781 ABC_tran_Xtn 325 412
IPR003439 ABC_transporter-like_ATP-bd 111 286
No external refs found!