LOC_Os02g42860.1

Description : DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica (sp|q6h7s2|rh8_orysj : 903.0)

Gene families : OG_01_0002759 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002759_tree ,
OG_02_0002600 (LandPlants) Phylogenetic Tree(s): OG_02_0002600_tree ,
OG_03_0003057 (SeedPlants) Phylogenetic Tree(s): OG_03_0003057_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os02g42860.1
Cluster	HCCA: Cluster_301

Target	Alias	Description	ECC score	Gene Family Method
AT4G00660	RH8, ATRH8	RNAhelicase-like 8	0.03	Archaeplastida
Cpa\|evm.model.tig00001086.7	No alias	DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa...	0.01	Archaeplastida
GSVIVT01026866001	No alias	DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana	0.02	Archaeplastida
MA_10428543g0010	No alias	No annotation	0.03	Archaeplastida
Pp3s121_40V3.1	No alias	RNAhelicase-like 8	0.02	Archaeplastida
Zm00001e015237_P002	No alias	DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa...	0.04	Archaeplastida
AT4G00660	RH8, ATRH8	RNAhelicase-like 8	0.03	LandPlants
GSVIVT01026866001	No alias	DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana	0.02	LandPlants
MA_10428543g0010	No alias	No annotation	0.03	LandPlants
Pp3s121_40V3.1	No alias	RNAhelicase-like 8	0.02	LandPlants
Zm00001e012585_P001	No alias	DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa...	0.02	LandPlants
Zm00001e015237_P002	No alias	DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa...	0.03	LandPlants
AT4G00660	RH8, ATRH8	RNAhelicase-like 8	0.03	SeedPlants
GSVIVT01026866001	No alias	DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana	0.02	SeedPlants
MA_10428543g0010	No alias	No annotation	0.03	SeedPlants
Zm00001e012585_P001	No alias	DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa...	0.02	SeedPlants
Zm00001e015237_P002	No alias	DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa...	0.03	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	159	323
IPR001650	Helicase_C	360	466

External Links

No external refs found!